NAME

       gthbssmbuild - build splice site model

SYNOPSIS

       gthbssmbuild [option ...] genomic_file cDNA_file

DESCRIPTION

       Build a BSSM file from a directory tree containing the training data.

OPTIONS

       -bssmfile
           specify name of BSSM file to store parameters in default: undefined

       -datapath
           specify root of species-specific training data directory tree default: undefined

       -gtdonor
           train GT donor model default: no

       -gcdonor
           train GC donor model default: no

       -agacceptor
           train AG acceptor model default: no

       -gzip
           use gzip’ed input files default: no

       -help
           display help and exit

       -version
           display version information and exit

                                                                                                 GTHBSSMBUILD(1)