NAME

       lambda2 - Lambda, the Local Aligner for Massive Biological DataA

SYNOPSIS

       lambda2 [OPTIONS] COMMAND [COMMAND-OPTIONS]

DESCRIPTION

       Lambda  is  a  local  aligner  optimized  for  many  query sequences and searches in protein space. It is
       compatible to BLAST, but much faster than BLAST and many other comparable tools.

       Detailed information is available in the wiki: <https://github.com/seqan/lambda/wiki>

REQUIRED ARGUMENTS

       COMMAND STRING
              The sub-program to execute. See below. One of searchp, searchn, mkindexp, and mkindexn.

OPTIONS

       -h, --help
              Display the help message.

       --version-check BOOL
              Turn this option off to disable version update notifications of the application.  One  of  1,  ON,
              TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1.

       --version
              Display version information.

       --copyright
              Display long copyright information.

AVAILABLE COMMANDS

       searchp  – Perform a protein search (BLASTP, BLASTX, TBLASTN, TBLASTX).

       searchn  – Perform a nucleotide search (BLASTN, MEGABLAST).

       mkindexp – Create an index for protein searches.

       mkindexn – Create an index for nucleotide searches.

       To view the help page for a specific command, simply run 'lambda command --help'.

LEGAL

       lambda2 Copyright: 2013-2019 Hannes Hauswedell, released under the GNU AGPL v3 (or later); 2016-2019 Knut
       Reinert and Freie Universität Berlin, released under the 3-clause-BSDL
       SeqAn Copyright: 2006-2015 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       In your academic works please cite: Hauswedell et al (2014); doi: 10.1093/bioinformatics/btu439
       For full copyright and/or warranty information see --copyright.