NAME

       mia-2dsegshiftperslice - Translate a segmentation by the given amount.

SYNOPSIS

       mia-2dsegshiftperslice -i <in-file> -o <out-file> -S <shift> [options]

DESCRIPTION

       mia-2dsegshiftperslice  This program move the segmentation(s) of an image series by using a shift that is
       given on a per-slice base. The program can be used to correct the segmentation of the images if a  linear
       registration  was  executed  that  only  applies  a  translation  and  does  not correct the segmentation
       automatically.

OPTIONS

              -i --in-file=(input, required); string
                     input segmentation set

              -o --out-file=(required, output); string
                     output segmentation set

              -g --image-file=crop
                     output image filename base

              -S --shift=(required); string
                     shift of segmentation - base name

   Help & Info
              -V --verbose=warning
                     verbosity of output, print  messages  of  given  level  and  higher  priorities.  Supported
                     priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum  number  of  threads to use for processing,This number should be lower or equal to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

EXAMPLE

       Shirt the segmentation given  in  set  segment.set  by  files  shiftXXXX.txt  and  store  the  result  in
       shifted.set. Note, the numbering of the shiftXXXX.txx files must coincide.

       mia-2dsegshiftperslice -i segment.set -o shifted.set -g shifted -S shift

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with  ABSOLUTELY
       NO WARRANTY  and  you  may redistribute it under the terms of the GNU GENERAL PUBLIC  LICENSE  Version  3
       (or later). For more information run the program with the option '--copyright'.