Provided by: emboss_6.6.0+dfsg-7ubuntu2_amd64
NAME
patmatmotifs - Scan a protein sequence with motifs from the PROSITE database
SYNOPSIS
patmatmotifs -sequence sequence [-full boolean] [-prune boolean] -outfile report patmatmotifs -help
DESCRIPTION
patmatmotifs is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).
OPTIONS
Input section -sequence sequence Additional section -full boolean Default value: N -prune boolean Ignore simple patterns. If this is true then these simple post-translational modification sites are not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site. Default value: Y Output section -outfile report
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
patmatmotifs is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.