NAME

       placnet - Plasmid Constellation Network project

DESCRIPTION

       Placnet  is  a  new tool for plasmid analysis in NGS projects. Placnet is optimized to work with Illumina
       sequences but it also works with 454, Iontorrent or any of the actual sequence technologies.

       The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads  against
       the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools.

OPTIONS

       Write inputFile Template

       placnet -generate

       Network process

       placnet -f inputFile.txt -p prefix -l min

       -f=s   Input file for PLACNET analysis.

       -p=s   Prefix name for output files (default 'placnet').

       -l=s   Minimun contig length to scaffold process (default '200').

SEE ALSO

       Lanza  VF,  de  Toro  M,  Garcill??n-Barcia MP, Mora A, Blanco J, Coque TM, de la Cruz F: Plasmid Flux in
       Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for
       Plasmid Reconstruction from Whole Genome Sequences.  PLoS Genet 2014, 10:e1004766