focal (1) plot_cladogram.1.gz

NAME

       plot_cladogram - determine features of organisms, clades, taxonomic units, genes

SYNOPSIS

       plot_cladogram   [-h]  [--clade_sep  CLADE_SEP]  [--max_lev  MAX_LEV]  [--max_point_size  MAX_POINT_SIZE]
       [--min_point_size  MIN_POINT_SIZE]   [--point_edge_width   MARKEREDGEWIDTH]   [--siblings_connector_width
       SIBLINGS_CONNECTOR_WIDTH]    [--parents_connector_width    PARENTS_CONNECTOR_WIDTH]   [--radial_start_lev
       RADIAL_START_LEV]   [--labeled_start_lev   LABELED_START_LEV]    [--labeled_stop_lev    LABELED_STOP_LEV]
       [--abrv_start_lev  ABRV_START_LEV]  [--abrv_stop_lev  ABRV_STOP_LEV]  [--expand_void_lev EXPAND_VOID_LEV]
       [--class_legend_vis CLASS_LEGEND_VIS] [--colored_connector COLORED_CONNECTORS] [--alpha  ALPHA]  [--title
       TITLE]   [--sub_clade   SUB_CLADE]   [--title_font_size   TITLE_FONT_SIZE]   [--right_space_prop  R_PROP]
       [--left_space_prop    L_PROP]    [--label_font_size    LABEL_FONT_SIZE]    [--background_color     {k,w}]
       [--colored_labels   {0,1}]   [--class_legend_font_size   CLASS_LEGEND_FONT_SIZE]  [--dpi  DPI]  [--format
       {png,svg,pdf}] [--all_feats ALL_FEATS] INPUT_FILE OUTPUT_FILE

DESCRIPTION

       Cladoplot

OPTIONS

   positional arguments:
       INPUT_FILE
              tab delimited input file

       OUTPUT_FILE
              the file for the output image

   optional arguments:
       -h, --help
              show this help message and exit

       --clade_sep CLADE_SEP

       --max_lev MAX_LEV

       --max_point_size MAX_POINT_SIZE

       --min_point_size MIN_POINT_SIZE

       --point_edge_width MARKEREDGEWIDTH

       --siblings_connector_width SIBLINGS_CONNECTOR_WIDTH

       --parents_connector_width PARENTS_CONNECTOR_WIDTH

       --radial_start_lev RADIAL_START_LEV

       --labeled_start_lev LABELED_START_LEV

       --labeled_stop_lev LABELED_STOP_LEV

       --abrv_start_lev ABRV_START_LEV

       --abrv_stop_lev ABRV_STOP_LEV

       --expand_void_lev EXPAND_VOID_LEV

       --class_legend_vis CLASS_LEGEND_VIS

       --colored_connector COLORED_CONNECTORS

       --alpha ALPHA

       --title TITLE

       --sub_clade SUB_CLADE

       --title_font_size TITLE_FONT_SIZE

       --right_space_prop R_PROP

       --left_space_prop L_PROP

       --label_font_size LABEL_FONT_SIZE

       --background_color {k,w}
              set the color of the background

       --colored_labels {0,1}
              draw the label with class color (1) or in black (0)

       --class_legend_font_size CLASS_LEGEND_FONT_SIZE

       --dpi DPI

       --format {png,svg,pdf}
              the format for the output file

       --all_feats ALL_FEATS

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.