NAME

       pxaa2cdn - Takes in AA alignment and unaligned Nucleotide file to give a Codon Alignment.

SYNOPSIS

       pxaa2cdn [OPTION]...

DESCRIPTION

       Takes  in AA alignment and unaligned Nucleotide file to give a Codon Alignment.  This will
       get rid of any sequences found in either only the Nucleotide or the Amino  Acid  Alignment
       This will take fasta, fastq, phylip, and nexus inputs.

       -a, --aaseqf=FILE
              input sequence file, stdin otherwise

       -n, --nucseqf=FILE
              input sequence file, stdin otherwise

       -o, --outf=FILE
              output fasta file, stout otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.