NAME

       rnr-mast - computes maximum agreement trees for unrooted input sets

SYNOPSIS

       rnr-mast -i <bootTrees> -n <runId> [-w <workingDir>] [-h] [-a] [-x <excludeFile>]

OPTIONS

   OBLIGATORY
       -i <bootTrees>
              A collection of bootstrap trees.

       -n <runId>
              An identifier for this run.

   OPTIONAL
       -a     Compute all possible MAST trees. Without this flag, you will only get a few MASTs that are easy to
              compute. As there may be an exponential number of MASTs, use this option with care.

       -w <workDir>
              A working directory where output files are created.

       -x <excludeFile>
              Exclude the taxa in this file (one taxon per line) prior to computing the MAST. If you compute all
              MASTs  anyway, this option is option will not be useful. However, you can use this option to speed
              up things.

       -h     This help file.

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.