NAME

       snap-aligner - scalable nucleotide alignment program

SYNOPSIS

       snap-aligner <command> [<options>]

DESCRIPTION

       Welcome to SNAP version 1.0beta.18.

   Commands:
       index  build a genome index

       single align single-end reads

       paired align paired-end reads

       daemon run in daemon mode--accept commands remotely

       Type a command without arguments to see its help.