NAME

       tradis_comparison - bio-tradis: compares two experimental conditions using the method of Dembek et al.

SYNOPSIS

       tradis_comparison  [-h]  [-f]  [-t  read  cutoff]  [-o  outputfile.csv]  [-p  outputplot.pdf]  --controls
       controls.txt --conditions conditions.txt

DESCRIPTION

       Compares two experimental conditions using the method of Dembek et al.  mBio 2015. Read counts  per  gene
       are compared using edgeR. This analysis requires experimental replicates.

OPTIONS

   Required Arguments:
       --controls
              control libraries, generally growth in a permissive condition

       --conditions
              libraries exposed to the experimental condition being compared

   Optional Arguments:
       -o     output filename

       -p     output filename for diagnostic plots

       -f     enable filtering on minimum read counts

       -t     if  --filter  is  enabled,  sets  minimum  read  count necessary in one condition for a gene to be
              included in the comparison.

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.