NAME

       xtractore - extract sequences corresponding to annotated features from the given sequence file

SYNOPSIS

       xtractore [options] features.gff3 sequences.fasta

DESCRIPTION

       Options:

       -d|--debug
              print debugging output

       -h|--help
              print this help message and exit

       -i|--idfile: FILE
              file containing a list of feature IDs (1 per line with no spaces); if provided, only features with
              IDs in this file will be extracted

       -o|--outfile: FILE
              file to which output sequences will be written; default is terminal (stdout)

       -t|--type: STRING
              feature type to extract; can be used multiple times to extract features of multiple types

       -v|--version
              print version number and exit

       -V|--verbose
              print verbose warning and error messages

       -w|--width: INT
              width of each line of sequence in the Fasta output; default is 80; set to 0 for no formatting