R_mds
project distance matrix into lower number of dimensions
- Provided by: seer (Version: 1.1.4-6)
- Report a bug
SYNOPSIS
R_mds -k <filtered_kmers.txt> -p <pheno_file>
DESCRIPTION
Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details
OPTIONS
Required
- -d, --dist
- Distance matrix output by kmds
- -p, --pheno
- Phenotype file used by seer
Optional
- -o, --output
- Output prefix (default 'all_structure')
- --pc
- Number of dimensions to project into (default 3)
- -R
- R executable (default 'which R')
- -h, --help
- Displays this message
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.