NAME

       all_dists - Given a tree in Newick (*.nh) format, report distances

DESCRIPTION

       Given  a  tree  in Newick (*.nh) format, report distances between all pairs of leaves.  If
       multiple files are given, then distances are computed  by  averaging  across  models,  and
       statistics  describing  the  errors  in  the  estimates  are  reported  (can be useful for
       bootstrapping; see 'phyloBoot --dump-mods').

USAGE

       all_dists <tree.nh> [<tree2.nh> <tree3.nh>...]

OPTIONS

       --mod, -m

              Read from tree model (*.mod) file(s) instead of Newick file.

       --tree, -t <file>|<string>

       Use leaf names from given tree.
              Useful when primary files

              use numbers rather than names.

       --help, -h Print this help message.