asn2xml
translate biological data from ASN.1 to XML
- Provided by: ncbi-tools-bin (Version: 6.1.20170106+dfsg1-9)
- Source: ncbi-tools6
- Report a bug
SYNOPSIS
asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]
DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that it converts packed sequence data back into human-readable ASCII text.
OPTIONS
A summary of options is included below.
- -
- Print usage message
- -b F
- Input asnfile in text mode
- -e
- Input is a Seq-entry
- -i filename
- Read ASN.1 from filename (default is stdin)
- -l filename
- Log errors to filename (default is stderr)
- -o filename
- Write XML to filename (default is stdout)
- -s
- Input is a Seq-submit
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml, /usr/share/doc/libncbi6/ncbixml.txt.gz