SYNOPSIS
barrnap [options] <chromosomes.fasta>
DESCRIPTION
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
OPTIONS
- --help
- This help
- --version
- Print version and exit
- --citation
- Print citation for referencing barrnap
- --kingdom [X]
- Kingdom: mito bac arc euk (default 'bac')
- --quiet
- No screen output (default OFF)
- --threads [N]
- Number of threads/cores/CPUs to use (default '8')
--lencutoff [n.n] Proportional length threshold to label as partial (default '0.8')
- --reject [n.n]
- Proportional length threshold to reject prediction (default '0.5')
- --evalue [n.n]
- Similarity e-value cut-off (default '1e-09')
- --incseq
- Include FASTA input sequences in GFF3 output (default OFF)