NAME

       bowtie-inspect - extracts information from a bowtie index

SYNOPSIS

       bowtie-inspect [options]* <ebwt_base>

DESCRIPTION

       <ebwt_base>
              ebwt filename minus trailing .1.ebwt/.2.ebwt

              By  default,  prints  FASTA records of the indexed nucleotide sequences to standard out.  With -n,
              just prints names.  With -s, just prints a summary of the index parameters  and  sequences.   With
              -e, preserves colors if applicable.

OPTIONS

       --large-index
              force inspection of the 'large' index, even if a 'small' one is present.

       -a/--across <int>
              Number of characters across in FASTA output (default: 60)

       -n/--names
              Print reference sequence names only

       -s/--summary
              Print summary incl. ref names, lengths, index properties

       -e/--ebwt-ref
              Reconstruct reference from ebwt (slow, preserves colors)

       -v/--verbose
              Verbose output (for debugging)

       -h/--help
              print detailed description of tool and its options

       --help print this usage message

       64-bit Built on Debian-reproducible Tue, 14 Sep 2021 07:01:35 +0200 Compiler: gcc version 11.2.0 Options:
       -O3     -Wl,--hash-style=both     -DPOPCNT_CAPABILITY     -Wdate-time    -D_FORTIFY_SOURCE=2    -g    -O2
       -ffile-prefix-map=.=.      -flto=auto      -ffat-lto-objects      -fstack-protector-strong       -Wformat
       -Werror=format-security       -g      -O2      -ffile-prefix-map=.=.     -flto=auto     -ffat-lto-objects
       -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -Wl,-Bsymbolic-functions  -flto=auto
       -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

bowtie-inspect version 1.3.1                     September 2021                                BOWTIE-INSPECT(1)