NAME

       run_neighbor - run Phylip's 'neighbor' program through Bioperl

SYNOPSIS

       run_neighbor [-i inputfile] [-o outfilename]

DESCRIPTION

       Provide an matrix file to run neighbor on.  File should be named of the forma file.matrix
       or file.protdist (the ending doesn't matter, but the program expects a file in the form of
       (\S+)\.(\S+).

       This will run the application 'neighbor' to build a Neighbor-Joining tree from a protein
       distance matrix.

AUTHOR

       Jason Stajich, jason-AT-open-bio-DOT-org