NAME

       bppalnscore - Bio++ alignment scoring

SYNOPSIS

       bppalnscore [options]

AVAILABILITY

       All UNIX flavors

DESCRIPTION

       bppalnscore compares two alignment and compute corresponding column scores.  Scores can be
       output to a text file, and/or used to generate a site selection to be  output  as  a  Mase
       file.

OPTIONS

       You  should  refer  to  'info bppsuite' or to the online manual of bppsuite for a complete
       list of available options.

       --noninteractive

            generates output for redirection in a file.

       param=file

            reads a file for loading options

AUTHOR

       Bio++ Development Team.

                                              LOCAL                                BPPALNSCORE(1)