NAME

       cnvkit-reference2targets - Extract target and antitarget BED files from a CNVkit reference
       file.

DESCRIPTION

       usage: cnvkit-reference2targets [-h] [-o OUTPUT] reference

       Extract target and antitarget BED files from a CNVkit reference  file.  Once  you  have  a
       stable  CNVkit reference for your platform, you can use this script to drop the "bad" bins
       from your target and antitarget BED files and avoid unnecessarily calculating coverage  in
       those  bins  during  future  runs.  This  script  is also useful to recover the target and
       antitarget BED files that match the reference if those BED files are missing or you're not
       sure which ones are correct.

   positional arguments:
       reference
              Reference file.

   optional arguments:
       -h, --help
              show this help message and exit

       -o OUTPUT, --output OUTPUT
              Output base name (extensions added automatically).