NAME

       cyvcf2 - fast parsing of VCF and BCF including region-queries

SYNOPSIS

       cyvcf2 [OPTIONS] <vcf_file> or -

DESCRIPTION

              fast vcf parsing with cython + htslib

OPTIONS

       -c, --chrom TEXT
              Specify what chromosome to include.

       -s, --start INTEGER
              Specify the start of region.

       -e, --end INTEGER
              Specify the end of the region.

       --include TEXT
              Specify what info field to include.

       --exclude TEXT
              Specify what info field to exclude.

       -i, --individual TEXT
              Only print genotype call for individual.

       --no-inds
              Do not print genotypes.

       --loglevel [DEBUG|INFO|WARNING|ERROR|CRITICAL]
              Set the level of log output.  [default: INFO]

       --silent
              Skip printing of vcf.

       --help Show this message and exit.

cyvcf2 0.30.14                                     March 2022                                          CYVCF2(1)