NAME

       extractalign - Extract regions from a sequence alignment

SYNOPSIS

       extractalign -sequence seqset -regions range -outseq seqoutall

       extractalign -help

DESCRIPTION

       extractalign is a command line program from EMBOSS (“the European Molecular Biology Open Software
       Suite”). It is part of the "Alignment,Data retrieval:Sequence data,Edit" command group(s).

OPTIONS

   Input section
       -sequence seqset

   Required section
       -regions range
           Regions to extract. A set of regions is specified by a set of pairs of positions. The positions are
           integers. They are separated by any non-digit, non-alpha character. Examples of region specifications
           are: 24-45, 56-78 1:45, 67=99;765..888 1,5,8,10,23,45,57,99 Default value:
           $(sequence.begin)-$(sequence.end)

   Output section
       -outseq seqoutall

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       extractalign is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                   EXTRACTALIGN(1e)