NAME

       fastaq_deinterleave - Splits interleaved paired file into two separate files

DESCRIPTION

       usage: fastaq_deinterleave [options] <infile> <out_fwd> <out_rev>

       Deinterleaves  sequence  file,  so  that  reads are written alternately between two output
       files

   positional arguments:
       infile Name of fasta/q file to be deinterleaved

       out_fwd
              Name of output fasta/q file of forwards reads

       out_rev
              Name of output fasta/q file of reverse reads

   optional arguments:
       -h, --help
              show this help message and exit

       --fasta_out
              Use this to write output as fasta (default is same as input)