fastaq_deinterleave

Splits interleaved paired file into two separate files

Provided by: fastaq (Version: 3.17.0-4)
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DESCRIPTION

usage: fastaq_deinterleave [options] <infile> <out_fwd> <out_rev>

Deinterleaves sequence file, so that reads are written alternately between two output files

positional arguments:

infile: Name of fasta/q file to be deinterleaved
out_fwd: Name of output fasta/q file of forwards reads
out_rev: Name of output fasta/q file of reverse reads

optional arguments:

-h, --help: show this help message and exit
--fasta_out: Use this to write output as fasta (default is same as input)