NAME

       fastaq_trim_contigs - Trims a set number of bases off the end of every contig

DESCRIPTION

       usage: fastaq_trim_contigs [options] <infile> <outfile>

       Trims  a set number of bases off the end of every contig, so gaps get bigger and contig ends are removed.
       Bases are replaced with Ns. Any sequence that ends up as all Ns is lost

   positional arguments:
       infile Name of input file

       outfile
              Name of output file

   optional arguments:
       -h, --help
              show this help message and exit

       --trim_number TRIM_NUMBER
              Number of bases to trim around each gap, and off ends of each sequence [100]

fastaq_trim_contigs 3.17.0                       September 2021                           FASTAQ-TRIM_CONTIGS(1)