fastq-clipper
ea-utils: removes one or more adapter sequences from the fastq file
- Provided by: ea-utils (Version: 1.1.2+dfsg-9build1)
- Report a bug
DESCRIPTION
usage: fastq-clipper [options] <fastq-file> <adapters>
Removes one or more adapter sequences from the fastq file. Adapter sequences are colon-delimited. Stats go to stderr, unless -o is specified.
OPTIONS
- -h
- This help
- -o FIL
- Output file (stats to stdout)
- -p N
- Maximum difference percentage (10)
- -m N
- Minimum clip length (1)
- -l N
- Minimum remaining sequence length (15)
- -x [N]
- Extra match length past adapter length,
- N =-1 : search all N = 0 : search only up to adapter length