NAME

       getVariance - estimates variance of MCMC samples

SYNOPSIS

       getVariance -o <outFileName>  [OPTIONS] [sampleFiles]

DESCRIPTION

       Estimates variance of MCMC samples from 1 or multiple replicates.

              [sample Files] should contain transposed MCMC samples from replicates.

OPTIONS

       --help

              Show this help information.

       -l ,   --log

              Use logged values. (default: Off)

       --norm=<normalization>

              Normalization  constants  for  each  input file provided as comma separated list of
              doubles (e.g. 1.0017,1.0,0.9999 ).

       -o <outFileName> ,   --outFile=<outFileName>

              Name of the output file.

       -t <type> ,   --type=<type>

              Type of variance, possible values: [sample,sqDif] for sample  variance  or  squared
              difference. (default: sample)

       -v ,   --verbose

              Verbose output. (default: Off)