gt-compreads-refdecompress
Decodes a given RCR (Reference Compressed Reads).
- Provided by: genometools (Version: 1.6.2+ds-2)
- Report a bug
SYNOPSIS
gt compreads refdecompress [option ...] (-file file)
DESCRIPTION
-v [yes|no]
be verbose (default: no)
-qnames [yes|no]
decode read names, default is to just number them
(default: no)
-ref [string]
Index file (generated by the gt encseq tool) for
reference genome. (default: undefined)
-rcr [string]
specify base name of file containing RCR. (default:
undefined)
-name [string]
specify base name for decoded RCR (suffix will be
".rcr.decoded") (default: undefined)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.