NAME

       gt-seq - Parse the given sequence file(s) and construct the corresponding index files.

SYNOPSIS

       gt seq [option ...] sequence_file [...]

DESCRIPTION

       -recreate [yes|no]
           recreate index files, even if they exist already (default: no)

       -showfasta [yes|no]
           show all sequences (in FASTA format) (default: no)

       -showseqnum [value]
           show sequence with given number (sequences are counted from 1 unless -seqnum_from_0 is
           specified) (default: undefined)

       -showseqlength [value]
           show length of sequence with given number (sequences are counted from 1 unless
           -seqnum_from_0 is specified) (default: undefined)

       -showseqnum_inputfile [filename]
           show sequence with given numbers specified line by line in given file (sequences are
           counted from 1 unless -seqnum_from_0 is specified) (default: undefined)

       -seqnum_from_0 [yes|no]
           for options -showseqnum and -showseqnum_inputfile: count sequence numbers from 0
           instead of 1 (default: no)

       -gc-content [yes|no]
           print GC-content (for DNA files) (default: no)

       -stat [yes|no]
           show sequence statistics (default: no)

       -seqlengthdistri [yes|no]
           show sequence length distribution (default: no)

       -width [value]
           set output width for FASTA sequence printing (0 disables formatting) (default: 0)

       -o [filename]
           redirect output to specified file (default: undefined)

       -gzip [yes|no]
           write gzip compressed output file (default: no)

       -bzip2 [yes|no]
           write bzip2 compressed output file (default: no)

       -force [yes|no]
           force writing to output file (default: no)

       -help
           display help and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to https://github.com/genometools/genometools/issues.