kalign
Global and progressive multiple sequence alignment
- Provided by: kalign (Version: 1:3.3.1-1)
- Report a bug
SYNOPSIS
kalign-avx2 -i <seq file> -o <out aln>
DESCRIPTION
Kalign (3.2.3)
OPTIONS
- --format
- : Output format. [Fasta]
- --reformat
- : Reformat existing alignment. [NA]
- --version (-V/-v)
- : Prints version. [NA]
EXAMPLES
Passing sequences via stdin:
- cat input.fa | kalign -f fasta > out.afa
Combining multiple input files:
- kalign seqsA.fa seqsB.fa seqsC.fa -f fasta > combined.afa
COPYRIGHT
Copyright © 2006,2019,2020 Timo Lassmann
This program comes with ABSOLUTELY NO WARRANTY; for details type:
`kalign -showw'.
This is free software, and you are welcome to redistribute it under certain
conditions; consult the COPYING file for details.
Please cite:
- Lassmann, Timo. "Kalign 3: multiple sequence alignment of large data sets." Bioinformatics (2019) https://doi.org/10.1093/bioinformatics/btz795
AUTHOR
This manpage was written by Nilesh Patra for the Debian
distribution and
can be used for any other usage of the program.