NAME

       ktImportRDP - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

              Creates a Krona chart from RDP classifications.

       ktImportRDP \

              [options] \ rdp_details_1[,name_1] \ [rdp_details_2[,name_2]] \ ...

       rdp_details
              RDP  assignment  details  downloaded  as text from the RDP Classifier web portal or
              output by the command line RDP Classifier or Multiclassifier. By default,  separate
              datasets will be created for each input (see [-c]).

       name   A  name to show in the list of datasets in the Krona chart (if multiple input files
              are present and [-c] is not specified). By default, the basename of the  file  will
              be used.

       [-o <string>]
              Output file name. [Default: 'rdp.krona.html']

       [-n <string>]
              Name of the highest level. [Default: 'root']

       [-c]   Combine  data  from  each  file,  rather than creating separate datasets within the
              chart.

       [-m <number>]
              Minimum confidence. Each query sequence will  only  be  added  to  taxa  that  were
              predicted with a confidence score of at least this value.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-x <integer>]
              Hue (0-360) for "bad" scores. [Default: '0']

       [-y <integer>]
              Hue (0-360) for "good" scores. [Default: '120']

       [-u <string>]
              URL  of  Krona  resources  to  use  instead  of  bundling them with the chart (e.g.
              "http://krona.sourceforge.net"). Reduces size of charts and allows updates,  though
              charts will not work without access to this URL.

       [-qp <string>]
              Url  to  send  query IDs to (instead of listing them) for each wedge. The query IDs
              will be sent as a comma separated list in the POST  variable  "queries",  with  the
              current  dataset index (from 0) in the POST variable "dataset". The url can include
              additional variables encoded via GET.