mapMers
report statistics of mapping kmers to sequences
- Provided by: meryl (Version: 0~20150903+r2013-8build2)
- Source: kmer
- Report a bug
SYNOPSIS
mapMers {-stats|-regions|-details} -m mersize -mers mers -seq fasta
OPTIONS
- -stats
- reports the mean, minimum, and maximum for each sequence, along with a log2 histogram of the counts
- -regions
- reports regions with kmer coverage
- -details
- reports the forward and reverse count in the database for each kmer in the sequence
- -m mersize
- -mers mers
- the meryl(1) database
- -seq fasta
- input sequence file