NAME

       marscan - Finds matrix/scaffold recognition (MRS) signatures in DNA sequences

SYNOPSIS

       marscan -sequence seqall -outfile report

       marscan -help

DESCRIPTION

       marscan is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Nucleic:Gene finding,Nucleic:Functional
       sites,Nucleic:Transcription" command group(s).

OPTIONS

   Input section
       -sequence seqall

   Output section
       -outfile report
           File for output of MAR/SAR recognition signature (MRS) regions. This contains details
           of the MRS in normal GFF format. The MRS consists of two recognition sites, one of 8
           bp and one of 16 bp on either sense strand of the genomic DNA, within 200 bp of each
           other.

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       marscan is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.