NAME

       mash2matrix - create all pairwise distances between samples

SYNOPSIS

       mash2matrix <matrix_in> > all_distances.csv

DESCRIPTION

       Uses mash (http://mash.readthedocs.io/) to create all pairwise distances between samples.

       NB: the input to mash should be the same order as the .pheno file generate <assemblies.fa>
       with:

              cut -f 1 metadata.pheno | tr '

              ' ' '

       Then run

              mash sketch -o reference <assemblies.fa>

              mash dist reference.msh reference.msh > mash_distances.txt

              mash2matrix mash_distances.txt > all_distances.csv

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.