NAME

       mincpik - MNI medical image format tools

DESCRIPTION

       Option h is ambiguous (help, horizontal) Usage:

              mincpik [options] <infile>.mnc [<image.type>]

              mincpik  generates  image  files  from  MINC  volumes using the Imagemagick convert
              utility. Use -help or -man for more information and examples

OPTIONS

       -v, --verbose

              Be noisy when doing things

       --version

              Print version number and exit

       -?, --help

              Dump some quick help output

       --man

              Dump a man page

       -c --clobber

              overwrite the output file if it exists already

       -f --fake

              do a dry run, (echo cmds only). This is usually used in combination  with  -verbose
              to echo commands only

       --scale

              scaling  factor  for  resulting  image, by default images are output at twice their
              original resolution

       --width

              autoscale the resulting image to have a fixed image width (in pixels)

       --depth

              bitdepth for resulting image 8 or 16 (MSB machines only!)

       --title

              add a title to the resulting image, if just this option is specified the text  used
              for the title is the name of the input image file.

       --title_text

              use  the  input string for the title [default: input-filename]. This option must be
              used in conjunction with -title

       --title_size

              font point size for the title

       --anot_bar

              create an annotated bar to match the image (use height of the output image)

              Image range and lookup table options:

       --range

              valid range of values for MINC file

       --image_range

              range of image values to use for pixel intensity

       --auto_range

              automatically determine image range using a 5 and 95% PcT.  (histogram)

       --lookup

              arguments to pass to minclookup

              Slicing options:

       -s --slice

              slice number to get. (note this is in voxel co-ordinates)

       -z --axial --transverse

              get an axial/transverse (z) slice

       -y --coronal

              get a coronal (y) slice

       -x --sagittal

              get a sagital (x) slice

              Triplanar options:

       -t --triplanar

              create a triplanar view of the input file

       --tilesize

              pixel size for each image in a triplanar

       --sagittal_offset

              offset the sagittal slice from the centre

       --sagittal_offset_perc

              offset the sagittal slice by a percentage from the centre

       --vertical

              create a vertical triplanar view (Default)

       --horizontal

              create a horizontal triplanar view