NAME

       msbar - Mutate a sequence

SYNOPSIS

       msbar -sequence seqall -othersequence seqall -count integer -point list -block list -codon list
             -inframe boolean -minimum integer -maximum integer -outseq seqoutall

       msbar -help

DESCRIPTION

       msbar is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is
       part of the "Nucleic:Mutation,Protein:Mutation" command group(s).

OPTIONS

   Input section
       -sequence seqall

       -othersequence seqall
           If you require that the resulting mutated sequence should not match a set of other sequences, then
           you can specify that set of sequences here. For example, if you require that the mutated sequence
           should not be the same as the input sequence, enter the input sequence here. If you want the result
           to be different to previous results of this program, specify the previous result sequences here. The
           program will check that the result does not match the sequences specified here before writing it out.
           If a match is found, then the mutation is started again with a fresh copy of the input sequence. If,
           after 10 such retries, there is still a match to the set of sequence given here, then the matching
           mutated sequence is written with a warning message. Default value: asis:N

   Required section
       -count integer
           Default value: 1

       -point list

       -block list

       -codon list
           Types of codon mutations to perform. These are only done if the sequence is nucleic.

   Additional section
       -inframe boolean
           Default value: N

   Advanced section
       -minimum integer
           Default value: 1

       -maximum integer
           Default value: 10

   Output section
       -outseq seqoutall

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       msbar is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.