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optimir

Integrating genetic variations in miRNA alignment

optimir [options]

OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression. OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, and study the impact of genetic variations on polymiRs' expression.


Produce help message

Process a single fastq file with the OptimiR workflow
Summarize results of previously processed samples
Only prepare small RNA alignment library sequences that integrates genetic variants (required before processing multiple samples in parallel)

https://github.com/FlorianThibord/OptimiR

OptimiR was written by Florian Thibord.