NAME

       patmatdb - Searches protein sequences with a sequence motif

SYNOPSIS

       patmatdb -sequence seqall -motif string -outfile report

       patmatdb -help

DESCRIPTION

       patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Protein:Motifs" command group(s).

OPTIONS

   Input section
       -sequence seqall

   Required section
       -motif string
           Patterns for patmatdb are based on the format of pattern used in the PROSITE database. For example:
           '[DE](2)HS{P}X(2)PX(2,4)C' means two Asps or Glus in any order followed by His, Ser, any residue
           other then Pro, then two of any residue followed by Pro followed by two to four of any residue
           followed by Cys. The search is case-independent, so 'AAA' matches 'aaa'.

   Output section
       -outfile report

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       patmatdb is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                       PATMATDB(1e)