NAME

       pizzly - pizzly

DESCRIPTION

       pizzly ======

       SYNOPSIS

       DESCRIPTION

       REQUIRED ARGUMENTS

              FUSION STRING

       OPTIONS

       -h, --help

              Display the help message.

       --version-check BOOL

              Turn  this  option  off to disable version update notifications of the application.
              One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO.  Default: 1.

       -k INTEGER

              k-mer size used in kallisto

       -a, --align-score INTEGER

              Maximum number of mismatches allowed (default: 2)

       -i, --insert-size INTEGER

              Maximum fragment size of library (default: 400)

       -o, --output STRING

              Prefix for output files

       -G, --gtf STRING

              Annotation in GTF format

       -C, --cache STRING

              File for caching annotation (created if not present, otherwise reused from previous
              runs)

       -F, --fasta STRING

              Fasta reference

       --ignore-protein

              Ignore any protein coding information in annotation

       --version

              Display version information.

       VERSION

              Last update: pizzly version: 0.37.3 SeqAn version: 2.4.0

       SeqAn version: 2.4.0