prokka-genbank_to_fasta_db
rapid annotation of prokaryotic genomes
- Provided by: prokka (Version: 1.14.6+dfsg-4)
- Report a bug
SYNOPSIS
prokka-genbank_to_fasta_db [options] [genome1.gbk ...] > proteins.faa
DESCRIPTION
- --help
- This help.
- --verbose!
- Verbose progress (default '0').
- --format=s
- Input format (default 'genbank').
- --idtag=s
- What tag to use as Fasta ID (default 'protein_id').
- --sep=s
- Separator between EC/gene/product (default '~~~').
- --blank=s
- Replace empty EC/gene/product with this (default '').
- --pseudo!
- Include /pseudo genes (default '0').
- --hypo!
- Include 'hypothetical protein' genes (default '0').
- --minlen=i
- Minimum peptide length (default '0').