NAME

       prokka-uniprot_to_fasta_db - rapid annotation of prokaryotic genomes

SYNOPSIS

       prokka-uniprot_to_fasta_db [options] <uniprot.dat>

DESCRIPTION

       --help This help.

       --verbose!
              Verbose output (default '0').

       --separator=s
              Separator for gene/EC/product (default '~~~').

       --blank=s
              Replace empty gene/EC/product with this (default '').

       --evidence=i
              1=prot 2=mrna 3=homol 4=pred 5=unsure (default '2').

       --fragments!
              Include 'DE Flags: Fragment;' entries (default '0').

       --minlen=i
              Minimum peptide length (default '20').

       --term=s
              Lineage must contain this term eg. 'Bacteria' (default '').

       --hypo!
              Don't filter out hypothetical proteins (default '0').