propmapped
toolkit for processing next-gen sequencing data
- Provided by: subread (Version: 2.0.3+dfsg-1)
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DESCRIPTION
propMapped v2.0.1
- Calculate the proportion of mapped reads/fragments.
Usage:
- ./prommapped [options] -i <file>
Required arguments:
- -i <string>
- An input file containing read mapping results. Both SAM or BAM formats are supported.
Optional arguments:
- -o <string>
- Name of output file including mapping statistics.
- -f
- If specified, fragments (read pairs) will be counted instead of individual reads. This option is only applicable for paired-end reads.
- -p
- If specified, only properly paired reads will be counted. This option is only applicable for paired-end reads.
AUTHOR
This manpage was written by Nilesh Patra for the Debian
distribution and
can be used for any other usage of the program.