NAME

       rnr-mast - computes maximum agreement trees for unrooted input sets

DESCRIPTION

       This is RnR-mast version 1.0 released by Andre J. Aberer in 2011-10-25.

       This program computes maximum agreement trees for unrooted input sets.

       SYNTAX: rnr-mast -i <bootTrees> -n <runId> [-w <workingDir>] [-h] [-a] [-x <excludeFile>]

       OBLIGATORY: -i <bootTrees>

              A collection of bootstrap trees.

       -n <runId>

              An identifier for this run.

       OPTIONAL -a

              Compute all possible MAST trees. Without this flag, you will

              only  get  a  few  MASTs  that  are easy to compute. As there may be an exponential
              number of MASTs, use this option with care.

       -w <workDir>

              A working directory where output files are created.

       -x <excludeFile>

              Exclude the taxa in this file (one taxon per line)

              prior to computing the MAST. If you compute all MASTs anyway, this option is option
              will not be useful. However, you can use this option to speed up things.

       -h

              This help file.

AUTHOR

       This  manpage  was written by Nilesh Patra for the Debian distribution and can be used for
       any other usage of the program.