salmon

highly-accurate, transcript-level quantification estimates from RNA-seq data

Provided by: salmon (Version: 1.4.0+ds1-1build1)
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SYNOPSIS

salmon -h|--help or

DESCRIPTION

salmon v1.4.0

: salmon -v|--version or salmon -c|--cite or salmon [--no-version-check] <COMMAND> [-h | options]

Commands:

index: : create a salmon index
quant: : quantify a sample
alevin: : single cell analysis
swim: : perform super-secret operation

: quantmerge : merge multiple quantifications into a single file