SYNOPSIS
samtools.pl <command> [<arguments>]
DESCRIPTION
helper script for SAMtools
- Command:
- varFilter filtering SNPs and short indels
- pileup2fq generate fastq from `pileup -c'
- showALEN print alignment length (ALEN) following CIGAR
AUTHOR
THe software was written by Heng Li <lh3@sanger.ac.uk>
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.