vcfcheck

vcfcheck options

Validate integrity and identity of the VCF by verifying that the VCF record’s REF matches a given reference file.

options:
    -f, --fasta-reference  FASTA reference file to use to obtain primer sequences
    -x, --exclude-failures If a record fails, don't print it.  Otherwise do.
    -k, --keep-failures    Print if the record fails, otherwise not.
    -h, --help       Print this message.
    -v, --version    Print version.
Type: metrics
    

0

Success

not 0

Failure

vcflib(1)

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

Erik Garrison and vcflib contributors.