NAME

       wham-build - Wisconsin's High-Throughput Alignment Method

DESCRIPTION

   Usage:
              wham-build  [options]*  -l  <int> <ref_sequence> <basepath> -l <int>         specify the length of
              short  reads  <ref_sequence>    comma-separated  list  of  fiels  with  ref  sequences  <basepath>
              write wham data to files with this dir/basename

OPTIONS

       -v <int>
              report hits with <=v errors (0-5), ignore qualities

       -p <int>
              specify the number of fragments for alignments

       -m <int>
              discard subsequences appearing more than <int> times (default: 100).

       -b <int>
              specify the number of buckets

       -a     find all valid matches (need much more memory)

       --mask keep masked characters in the sequences (default: on)

       --unmask
              discard masked characters in the sequences. Masks are treated as Ns

       --version
              print version information

       -h/--help
              print this usage message

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

wham-build 0.1.5                                  February 2021                                    WHAM-BUILD(1)