Provided by: cmtk_3.3.1p2+dfsg-2build1_amd64 bug


       avg_adm - Average using ADM


       avg_adm [options] list0 [list1 ...]


       Compute  average-shape  average-intensity  images  and  deformation  maps  using an active
       deformation model.


   Global Toolkit Options (these are shared by all CMTK tools)
            Write list of basic command line options to standard output.

            Write complete list of basic and advanced command line options to standard output.

            Write list of command line options to standard output in MediaWiki markup.

            Write man page source in 'nroff' markup to standard output.

            Write toolkit version to standard output.

            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --label, -l
            Label mode (as opposed to grey)

       --set-padding <float>
            Set padding value in input files [Default: disabled]

       --replace-padding <float>
            Replace padding value in input files [Default: disabled]

       --pad-out <double>, -p <double>
            Padding value for output file [Default: disabled]

       --jacobian, -j
            Average Jacobian determinants of deformations.

       --auto-scale, -a
            Auto-scale image intensities

            Output is 8 bits, signed [default: automatic]

            Output is 8 bits, unsigned

            Output is 16 bits, signed

            Output is 16 bits, unsigned

            Output is 32 bits signed

            Output is 32 bits floating point

            Output is 64 bits floating point

       --no-scale-model, -S
            Exclude scale from statistical deformation model

       --no-ref-model, -R
            Exclude reference coordinate frame from deformation model

       --no-ref-data, -r
            Exclude reference data from averaging

       --output <string>, -o <string>
            Output file name [FORMAT:]path [Default: NONE]

       --input-warp <string>, -I <string>
            Input file name for average warp [Default: NONE]

       --output-warp <string>, -O <string>
            Output file name for average warp [Default: NONE]

       --with-affine, -A
            Include affine component of first warp in output

       --nn Use nearest neigbor interpolation

            Use tri-cubic interpolation

       --replace-from <string>
            Replace from pattern

       --replace-to <string>
            Replace to pattern


       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko



       Report bugs at


       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.