Provided by: cmtk_3.3.1p2+dfsg-2build1_amd64 bug


       xform2scalar - Extract scalar measures from transformations and deformation fields


       xform2scalar InputImage XformList


       This tool extracts scalar measures from transformations and deformation fields, sampled at
       grid locations, and writes the results to an image. Examples of supported scalar  measures
       are:  x,y,z component of the transformation, magnitude of the transformation, and Jacobian


   Global Toolkit Options (these are shared by all CMTK tools)
            Write list of basic command line options to standard output.

            Write complete list of basic and advanced command line options to standard output.

            Write list of command line options to standard output in MediaWiki markup.

            Write man page source in 'nroff' markup to standard output.

            Write command line syntax specification in XML markup (for Slicer integration).

            Write toolkit version to standard output.

            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Operating Options
            Mode of operation: type of scalar measure to be  extracted.   Supported  values:  "x-
            component",   "y-component",   "z-component",   "magnitude",  where  the  default  is
            "magnitude", or use one of the following:

                 X component of transformation vector.

                 Y component of transformation vector.

                 Z component of transformation vector.

                 Magnitude of the transformation vector.  [This is the default]

       --warp-only, -w
            Output warp component only (excluding affine).

   Output Options
            Scalar data type of output image.  Supported values:  "float",  "double",  where  the
            default is "double", or use one of the following:

                 Single-precision float.

                 Double-precision float.  [This is the default]

       --output <image-path>, -o <image-path>
            Output path for image with extracted scalar data.  [Default: NONE]


       Torsten  Rohlfing,  with  contributions  from  Michael  P. Hasak, Greg Jefferis, Calvin R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko



       Report bugs at


       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol  and  Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From
       April 2009 through September 2011, CMTK development and maintenance was supported  by  the
       NIBIB under Grant EB008381.