NAME

       cnvkit_bintest - Test for single-bin copy number alterations.

DESCRIPTION

       usage: cnvkit bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT] cnarray

   positional arguments:
       cnarray
              Bin-level log2 ratios (.cnr file), as produced by 'fix'.

   optional arguments:
       -h, --help
              show this help message and exit

       -s FILENAME, --segment FILENAME
              Segmentation calls (.cns), the output of the 'segment' command).

       -a ALPHA, --alpha ALPHA
              Significance threhold. [Default: 0.005]

       -t, --target
              Test target bins only; ignore off-target bins.

       -o OUTPUT, --output OUTPUT
              Output filename.