Provided by: cnvkit_0.9.9-2_amd64
cnvkit_breaks - List the targeted genes in which a copy number breakpoint occurs.
usage: cnvkit breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment positional arguments: filename Processed sample coverage data file (*.cnr), the output of the 'fix' sub-command. segment Segmentation calls (.cns), the output of the 'segment' command). optional arguments: -h, --help show this help message and exit -m MIN_PROBES, --min-probes MIN_PROBES Minimum number of within-gene probes on both sides of a breakpoint to report it. [Default: 1] -o FILENAME, --output FILENAME Output table file name.