NAME

       cnvkit_metrics - Compute coverage deviations and other metrics for self-evaluation.

DESCRIPTION

       usage: cnvkit metrics [-h] [-s SEGMENTS [SEGMENTS ...]] [--drop-low-coverage]

       [-o FILENAME]
              cnarrays [cnarrays ...]

   positional arguments:
       cnarrays
              One or more bin-level coverage data files (*.cnn, *.cnr).

   optional arguments:
       -h, --help
              show this help message and exit

       -s SEGMENTS [SEGMENTS ...], --segments SEGMENTS [SEGMENTS ...]
              One  or  more  segmentation data files (*.cns, output of the 'segment' command). If
              more than one file is given, the number must match  the  coverage  data  files,  in
              which  case  the input files will be paired together in the given order. Otherwise,
              the same segments will be used for all coverage files.

       --drop-low-coverage
              Drop very-low-coverage bins before calculations to reduce negative  "fat  tail"  of
              bin log2 values in poorquality tumor samples.

       -o FILENAME, --output FILENAME
              Output table file name.